Package: yaps 1.2.5
yaps: Track Estimation using YAPS (Yet Another Positioning Solver)
Estimate tracks of animals tagged with acoustic transmitters. 'yaps' was introduced in 2017 as a transparent open-source tool to estimate positions of fish (and other aquatic animals) tagged with acoustic transmitters. Based on registrations of acoustic transmitters on hydrophones positioned in a fixed array, 'yaps' enables users to synchronize the collected data (i.e. correcting for drift in the internal clocks of the hydrophones/receivers) and subsequently to estimate tracks of the tagged animals. The paper introducing 'yaps' is available in open access at Baktoft, Gjelland, Økland & Thygesen (2017) <doi:10.1038/s41598-017-14278-z>. Also check out our cookbook with a completely worked through example at Baktoft, Gjelland, Økland, Rehage, Rodemann, Corujo, Viadero & Thygesen (2019) <doi:10.1101/2019.12.16.877688>. Additional tutorials will eventually make their way onto the project website at <https://baktoft.github.io/yaps/>.
Authors:
yaps_1.2.5.tar.gz
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yaps.pdf |yaps.html✨
yaps/json (API)
NEWS
# Install 'yaps' in R: |
install.packages('yaps', repos = c('https://benjaminhlina.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/baktoft/yaps/issues
Last updated 12 months agofrom:6a3f3bccba. Checks:OK: 1 ERROR: 8. Indexed: no.
Target | Result | Date |
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Doc / Vignettes | OK | Oct 05 2024 |
R-4.5-win-x86_64 | ERROR | Oct 05 2024 |
R-4.5-linux-x86_64 | ERROR | Oct 05 2024 |
R-4.4-win-x86_64 | ERROR | Oct 05 2024 |
R-4.4-mac-x86_64 | ERROR | Oct 05 2024 |
R-4.4-mac-aarch64 | ERROR | Oct 05 2024 |
R-4.3-win-x86_64 | ERROR | Oct 05 2024 |
R-4.3-mac-x86_64 | ERROR | Oct 05 2024 |
R-4.3-mac-aarch64 | ERROR | Oct 05 2024 |
Exports:alignBurstSeqapplySynccheckInpcheckInpSyncfineTuneSyncModelgetBboxgetInpgetInpSyncgetSyncCoveragegetSyncModelgetToaYapsplotBboxplotSyncModelCheckplotSyncModelHydrosplotSyncModelResidsplotYapsprepDetectionsrunTmbrunYapssimHydrossimTelemetryTracksimToasimTrueTracktempToSstestYaps
Dependencies:bootcircularclicolorspacecowplotdata.tablefansifarverggplot2ggrepelgluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellmvtnormnlmenloptrpillarpkgconfigplyrR6RColorBrewerRcppRcppEigenreshape2rlangscalesstringistringrtibbletictocTMButf8vctrsviridisviridisLitewithrzoo