Package: trps 0.1.0

trps: Bayesian trophic position models using stan

Bayesian trophic position models using stan by leveraging 'brms' for stable isotope data. Trophic position models are derived by using equations from Post (2002) <doi:10.1890/0012-9658(2002)083[0703:USITET]2.0.CO;2>, Vander Zanden and Vadeboncoeur (2002) <doi:10.1890/0012-9658(2002)083[2152:FAIOBA]2.0.CO;2>, and Huevel et al. (2024) <doi:10.1139/cjfas-2024-0028>.

Authors:Benjamin L. Hlina [aut, cre]

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NEWS

# Install 'trps' in R:
install.packages('trps', repos = c('https://benjaminhlina.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/benjaminhlina/trps/issues

Pkgdown site:https://benjaminhlina.github.io

Datasets:
  • baseline_1_iso - Stable isotope data for amphipods
  • baseline_2_iso - Stable isotope data for dreissenids
  • combined_iso - Stable isotope data for lake trout, amphipods (benthic baseline; baseline 1) and dreissenids (pelagic baseline; baseline 2),
  • consumer_iso - Stable isotope data for lake trout

On CRAN:

Conda:

4.02 score 4 scripts 13 exports 74 dependencies

Last updated 3 hours agofrom:8877921f91. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 17 2025
R-4.5-winOKMar 17 2025
R-4.5-macOKMar 17 2025
R-4.5-linuxOKMar 17 2025
R-4.4-winOKMar 17 2025
R-4.4-macOKMar 17 2025
R-4.4-linuxOKMar 17 2025
R-4.3-winOKMar 17 2025
R-4.3-macOKMar 17 2025

Exports:add_alphaone_source_modelone_source_priorsone_source_priors_paramstwo_source_modeltwo_source_model_artwo_source_model_arctwo_source_priorstwo_source_priors_artwo_source_priors_arctwo_source_priors_paramstwo_source_priors_params_artwo_source_priors_params_arc

Dependencies:abindbackportsbayesplotBHbridgesamplingbrmsBrobdingnagcallrcheckmateclicodacodetoolscolorspacedescdigestdistributionaldplyrfansifarverfuturefuture.applygenericsggplot2ggridgesglobalsgluegridExtragtableinlineisobandlabelinglatticelifecyclelistenvloomagrittrMASSMatrixmatrixStatsmgcvmunsellmvtnormnleqslvnlmenumDerivparallellypillarpkgbuildpkgconfigplyrposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelreshape2rlangrstanrstantoolsscalesStanHeadersstringistringrtensorAtibbletidyselectutf8vctrsviridisLitewithr

Estimate Trophic Position - One Source Model - Multiple Groups

Rendered fromestimate_trophic_position_one_source_multiple_groups.Rmdusingknitr::rmarkdownon Mar 17 2025.

Last update: 2025-03-17
Started: 2025-03-17

Estimate Trophic Position - Two Source Model

Rendered fromestimate_trophic_position_two_source_model.Rmdusingknitr::rmarkdownon Mar 17 2025.

Last update: 2025-03-17
Started: 2025-03-17

Getting started with trps

Rendered fromtrps.Rmdusingknitr::rmarkdownon Mar 17 2025.

Last update: 2025-03-17
Started: 2025-03-15