Package: tRophicPosition 0.8.1
tRophicPosition: Bayesian Trophic Position Estimation with Stable Isotopes
Estimates the trophic position of a consumer relative to a baseline species. It implements a Bayesian approach which combines an interface to the 'JAGS' MCMC library of 'rjags' and stable isotopes. Users are encouraged to test the package and send bugs and/or errors to [email protected].
Authors:
tRophicPosition_0.8.1.tar.gz
tRophicPosition_0.8.1.zip(r-4.5)tRophicPosition_0.8.1.zip(r-4.4)tRophicPosition_0.8.1.zip(r-4.3)
tRophicPosition_0.8.1.tgz(r-4.4-any)tRophicPosition_0.8.1.tgz(r-4.3-any)
tRophicPosition_0.8.1.tar.gz(r-4.5-noble)tRophicPosition_0.8.1.tar.gz(r-4.4-noble)
tRophicPosition_0.8.1.tgz(r-4.4-emscripten)tRophicPosition_0.8.1.tgz(r-4.3-emscripten)
tRophicPosition.pdf |tRophicPosition.html✨
tRophicPosition/json (API)
NEWS
# Install 'tRophicPosition' in R: |
install.packages('tRophicPosition', repos = c('https://benjaminhlina.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/benjaminhlina/trophicposition/issues
- Bilagay - Data frame containing stable isotope values of Bilagay.
- Finnish_Lakes - Data frame of food webs in Inari and Kilpis Lakes
- Orestias - Named list containing stable isotope values of Orestias chungarensis
- Roach - Data frame of Roach in Lough Neagh
- Trout - Named list containing stable isotope values of Oncorhynchus mykiss
Last updated 1 months agofrom:53238ff589 (on Hlina-update-docs-seeds). Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 08 2024 |
R-4.5-win | OK | Nov 08 2024 |
R-4.5-linux | OK | Nov 08 2024 |
R-4.4-win | OK | Nov 08 2024 |
R-4.4-mac | OK | Nov 08 2024 |
R-4.3-win | OK | Nov 08 2024 |
R-4.3-mac | OK | Nov 08 2024 |
Exports:compareTwoDistributionscredibilityIntervalsextractIsotopeDataextractPredictiveDatafromParallelTPgenerateTPDatagetPosteriorModejagsBayesianModeljagsOneBaselinejagsTwoBaselinesjagsTwoBaselinesFullloadIsotopeDatamultiModelTPmultiSpeciesTPpairwiseComparisonsparametricTPplotTPposteriorTPscreenFoodWebscreenIsotopeDatasimulateTDFsimulateTEFsummariseIsotopeDataTDFTEFTPmodeltrophicDensityPlot
Dependencies:apeashclicodacolorspacecorpcorcubaturedata.tabledigestfansifarverFNNggplot2gluegridExtragtablehdrcdeisobandkernlabKernSmoothkslabelinglatticelifecyclelocfitmagrittrMASSMatrixmclustMCMCglmmmgcvmulticoolmunsellmvtnormnlmepillarpkgconfigplyrpracmaR6RColorBrewerRcpprjagsrlangscalestensorAtibbleutf8vctrsviridisLitewithr
tRophicPosition: calculating trophic position for multiple species
Rendered fromMultiple_species_calculation_of_trophic_position_in_R_1.Rmd
usingknitr::rmarkdown
on Nov 08 2024.Last update: 2024-09-11
Started: 2022-12-11
Short guide to the use of tRophicPosition
Rendered fromShort_guide_to_tRophicPosition.Rmd
usingknitr::rmarkdown
on Nov 08 2024.Last update: 2024-07-16
Started: 2017-05-29
Using tRophicPosition to estimate TP through the use of multiple models
Rendered fromMultiple_model_calculation_of_trophic_position_in_R.Rmd
usingknitr::rmarkdown
on Nov 08 2024.Last update: 2024-07-16
Started: 2017-05-29