Package: nichetools 0.3.2

nichetools: Complementary Package to 'nicheROVER' and 'SIBER'

Provides functions complementary to packages 'nicheROVER' and 'SIBER' allowing the user to extract Bayesian estimates from data objects created by the packages 'nicheROVER' and 'SIBER'. Please see the following publications for detailed methods on 'nicheROVER' and 'SIBER' Hansen et al. (2015) <doi:10.1890/14-0235.1>, Jackson et al. (2011) <doi:10.1111/j.1365-2656.2011.01806.x>, and Layman et al. (2007) <doi:10.1890/0012-9658(2007)88[42:CSIRPF]2.0.CO;2>, respectfully.

Authors:Benjamin L. Hlina [aut, cre]

nichetools_0.3.2.tar.gz
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nichetools.pdf |nichetools.html✨
nichetools/json (API)
NEWS

# Install 'nichetools' in R:
install.packages('nichetools', repos = c('https://benjaminhlina.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/benjaminhlina/nichetools/issues

Pkgdown site:https://benjaminhlina.github.io

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • mu_est_long - A 'data.frame' containing posterior estimates of mu
  • niw_fish_post - A 'list' of the posterior estimates of mu and Sigma from '{nicheROVER}'
  • over_stat - A 'data.frame' containing the estimates of percentage of overlap among groups
  • post_sam_siber - A 'list' of the posterior estimates of mu and Sigma from '{SIBER}'
  • sigma_est_wide - A 'data.frame' containing posterior estimates of Sigma

On CRAN:

jagscpp

6.21 score 2 stars 17 scripts 209 downloads 9 exports 60 dependencies

Last updated 3 months agofrom:73adbd000b. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 14 2025
R-4.5-winOKJan 14 2025
R-4.5-linuxOKJan 14 2025
R-4.4-winOKJan 14 2025
R-4.4-macOKJan 14 2025
R-4.3-winOKJan 14 2025
R-4.3-macOKJan 14 2025

Exports:create_comparisonsextract_group_metricsextract_laymanextract_muextract_niche_sizeextract_overlapextract_sigmaextract_similaritiesniche_ellipse

Dependencies:ashclicodacolorspacecpp11deldirdplyrellipsefansifarverFNNgenericsggplot2gluegtablehdrcdeisobandkernlabKernSmoothkslabelinglatticelifecyclelocfitmagrittrMASSMatrixmclustmgcvmnormtmulticoolmunsellmvtnormnicheROVERnlmepillarpkgconfigpolyclippracmapurrrR6RColorBrewerRcpprjagsrlangscalesSIBERspatstat.dataspatstat.geomspatstat.univarspatstat.utilsstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

Using {nichetools} with nicheROVER

Benjamin L. Hlina

Rendered fromusing-nichetools-with-the-package-nicheROVER.Rmdusingknitr::rmarkdownon Jan 14 2025.

Last update: 2024-09-30
Started: 2024-05-31

Using {nichetools} with SIBER

Benjamin L. Hlina

Rendered fromusing-nichetools-with-the-package-SIBER.Rmdusingknitr::rmarkdownon Jan 14 2025.

Last update: 2024-09-30
Started: 2024-07-17