{
  "_id": "6a250e2a4b233be198388af0",
  "Package": "mort",
  "Title": "Identifying Potential Mortalities and Expelled Tags in Aquatic\nAcoustic Telemetry Arrays",
  "Version": "0.0.1",
  "Authors@R": "c(\nperson(\"Rosie\", \"Smith\", , \"rosieluain@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0003-2675-4452\")),\nperson(\"Heidi\", \"Swanson\", role = \"fnd\")\n)",
  "Description": "A toolkit for identifying potential mortalities and\nexpelled tags in aquatic acoustic telemetry arrays. Designed\nfor arrays with non-overlapping receivers.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "URL": "https://github.com/rosieluain/mort,\nhttps://rosieluain.github.io/mort/",
  "BugReports": "https://github.com/rosieluain/mort/issues",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "LazyData": "true",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Repository": "https://benjaminhlina.r-universe.dev",
  "Date/Publication": "2026-05-08 15:51:41 UTC",
  "RemoteUrl": "https://github.com/rosieluain/mort",
  "RemoteRef": "HEAD",
  "RemoteSha": "20bcaf985c59faf0ba598b3de6381836e8169519",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-07 06:19:31 UTC",
    "User": "root"
  },
  "Author": "Rosie Smith [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0003-2675-4452>),\nHeidi Swanson [fnd]",
  "Maintainer": "Rosie Smith <rosieluain@gmail.com>",
  "MD5sum": "734c62958c404c3a179bed24d0a01b0e",
  "_user": "benjaminhlina",
  "_type": "src",
  "_file": "mort_0.0.1.tar.gz",
  "_fileid": "d19f31774815c132bd202518200c78d7ab206f1d508acb11406db6a337790aff",
  "_filesize": 3047784,
  "_sha256": "d19f31774815c132bd202518200c78d7ab206f1d508acb11406db6a337790aff",
  "_created": "2026-06-07T06:19:31.000Z",
  "_published": "2026-06-07T06:22:34.948Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79936956871,
      "time": 148,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7461408593"
    },
    {
      "job": 79936956880,
      "time": 148,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7461408639"
    },
    {
      "job": 79936956869,
      "time": 115,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7461404464"
    },
    {
      "job": 79936956879,
      "time": 100,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7461402732"
    },
    {
      "job": 79936699059,
      "time": 279,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7461390819"
    },
    {
      "job": 79936956870,
      "time": 108,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7461403765"
    },
    {
      "job": 79936956882,
      "time": 149,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7461408820"
    },
    {
      "job": 79936956894,
      "time": 107,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7461403862"
    },
    {
      "job": 79936956881,
      "time": 102,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7461402936"
    }
  ],
  "_buildurl": "https://github.com/r-universe/benjaminhlina/actions/runs/27084681562",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/rosieluain/mort",
  "_commit": {
    "id": "20bcaf985c59faf0ba598b3de6381836e8169519",
    "author": "rosieluain <rosieluain@gmail.com>",
    "committer": "rosieluain <rosieluain@gmail.com>",
    "message": "Fixed error in residences\n",
    "time": 1778255501
  },
  "_maintainer": {
    "name": "Rosie Smith",
    "email": "rosieluain@gmail.com",
    "login": "rosieluain",
    "description": "",
    "uuid": 43728187,
    "orcid": "0000-0003-2675-4452"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "lubridate",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "plotly",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "rosieluain",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-19",
      "n": 2
    }
  ],
  "_tags": [],
  "_topics": [
    "acoustic-telemetry",
    "aquatic",
    "mortality-estimation"
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "rosieluain",
      "count": 67,
      "uuid": 43728187
    }
  ],
  "_userbio": {
    "uuid": 29612410,
    "type": "user",
    "name": "Benjamin Hlina",
    "description": "Postdoctoral Researcher @ GLIER - University of Windsor - Studying food webs and spatial ecology of fishes in Lakes Ontario and Huron."
  },
  "_downloads": {
    "count": 147,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mort"
  },
  "_devurl": "https://github.com/rosieluain/mort",
  "_pkgdown": "https://rosieluain.github.io/mort/",
  "_searchresults": 23,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mort.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/rosieluain/mort",
  "_realowner": "rosieluain",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2023-09-04"
    }
  ],
  "_exports": [
    "backwards",
    "drift",
    "infrequent",
    "morts",
    "mortsplot",
    "residences",
    "resmax",
    "resmaxcml",
    "review",
    "season",
    "stationchange"
  ],
  "_datasets": [
    {
      "name": "ddd",
      "title": "Sample dead drift direction dataframe",
      "object": "ddd",
      "class": [
        "data.frame"
      ],
      "fields": [
        "From",
        "To"
      ],
      "rows": 18,
      "table": true,
      "tojson": true
    },
    {
      "name": "detections",
      "title": "Sample acoustic telemetry detection data",
      "object": "detections",
      "class": [
        "data.frame"
      ],
      "fields": [
        "DateTimeUTC",
        "Station.Name",
        "ID"
      ],
      "rows": 447627,
      "table": true,
      "tojson": true
    },
    {
      "name": "events",
      "title": "Sample residence events",
      "object": "events",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ResidenceStart",
        "Station.Name",
        "ID",
        "ResidenceEnd",
        "ResidenceLength.days"
      ],
      "rows": 11487,
      "table": true,
      "tojson": true
    },
    {
      "name": "new.data",
      "title": "Example of new acoustic telemetry detection data",
      "object": "new.data",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ResidenceStart",
        "Station.Name",
        "ID",
        "ResidenceEnd",
        "ResidenceLength.days"
      ],
      "rows": 2,
      "table": true,
      "tojson": true
    },
    {
      "name": "seasons",
      "title": "Ice-free seasons",
      "object": "seasons",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Start",
        "End"
      ],
      "rows": 5,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "backwards",
      "title": "Shift start time of potential mortalities earlier",
      "topics": [
        "backwards"
      ]
    },
    {
      "page": "ddd",
      "title": "Sample dead drift direction dataframe",
      "topics": [
        "ddd"
      ]
    },
    {
      "page": "detections",
      "title": "Sample acoustic telemetry detection data",
      "topics": [
        "detections"
      ]
    },
    {
      "page": "drift",
      "title": "Dead and drifting",
      "topics": [
        "drift"
      ]
    },
    {
      "page": "events",
      "title": "Sample residence events",
      "topics": [
        "events"
      ]
    },
    {
      "page": "infrequent",
      "title": "Identify potential mortalities from infrequent detections",
      "topics": [
        "infrequent"
      ]
    },
    {
      "page": "morts",
      "title": "Identify potential mortalities or expelled tags",
      "topics": [
        "morts"
      ]
    },
    {
      "page": "mortsplot",
      "title": "Plot residence events",
      "topics": [
        "mortsplot"
      ]
    },
    {
      "page": "new.data",
      "title": "Example of new acoustic telemetry detection data",
      "topics": [
        "new.data"
      ]
    },
    {
      "page": "residences",
      "title": "Generate residence events",
      "topics": [
        "residences"
      ]
    },
    {
      "page": "resmax",
      "title": "Maximum residence duration",
      "topics": [
        "resmax"
      ]
    },
    {
      "page": "resmaxcml",
      "title": "Maximum cumulative residence duration",
      "topics": [
        "resmaxcml"
      ]
    },
    {
      "page": "review",
      "title": "Review previously identified mortalities using new data",
      "topics": [
        "review"
      ]
    },
    {
      "page": "season",
      "title": "Select residence events from specified seasons",
      "topics": [
        "season"
      ]
    },
    {
      "page": "seasons",
      "title": "Ice-free seasons",
      "topics": [
        "seasons"
      ]
    },
    {
      "page": "stationchange",
      "title": "Identify most recent station change",
      "topics": [
        "stationchange"
      ]
    }
  ],
  "_pkglogo": "https://github.com/rosieluain/mort/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/rosieluain/mort/raw/HEAD/README.md",
  "_rundeps": [
    "cpp11",
    "generics",
    "lubridate",
    "rlang",
    "timechange"
  ],
  "_vignettes": [
    {
      "source": "a3_drift.Rmd",
      "filename": "a3_drift.html",
      "title": "Dead and drifting",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Specifying drift stations",
        "Applying drift",
        "drift() function"
      ],
      "created": "2023-06-16 18:39:32",
      "modified": "2023-09-06 17:19:51",
      "commits": 5
    },
    {
      "source": "a6_digging.Rmd",
      "filename": "a6_digging.html",
      "title": "Digging into your data",
      "engine": "knitr::rmarkdown",
      "headings": [
        "stationchange() function",
        "resmax() function",
        "resmaxcml() function"
      ],
      "created": "2023-06-16 18:39:32",
      "modified": "2023-06-27 21:59:11",
      "commits": 2
    },
    {
      "source": "a1_data-prep.Rmd",
      "filename": "a1_data-prep.html",
      "title": "Formatting your data",
      "engine": "knitr::rmarkdown",
      "headings": [
        "mort format",
        "Other formats",
        "actel",
        "glatos",
        "VTrack",
        "Other packages?",
        "Manual formatting"
      ],
      "created": "2023-06-16 18:39:32",
      "modified": "2023-09-01 15:46:18",
      "commits": 4
    },
    {
      "source": "a2_morts.Rmd",
      "filename": "a2_morts.html",
      "title": "Identifying potential mortalities",
      "engine": "knitr::rmarkdown",
      "headings": [
        "morts() function",
        "Duration of residence events",
        "1. last",
        "2. any",
        "Cumulative residence events",
        "Notes on selecting a method",
        "Output",
        "infrequent() function",
        "1. recent",
        "2. defined",
        "Options",
        "Exclude single detections",
        "Previously identified mortalities",
        "Look backwards",
        "Drift and season"
      ],
      "created": "2023-06-16 18:39:32",
      "modified": "2023-09-06 17:19:51",
      "commits": 5
    },
    {
      "source": "a5_plots.Rmd",
      "filename": "a5_plots.html",
      "title": "Plotting your data",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Basic plotting of residence events",
        "Customizing",
        "Interactive plots",
        "Options",
        "Add flagged mortalities",
        "Seasonality",
        "Facetting",
        "Exclude single detections",
        "Source code"
      ],
      "created": "2023-06-16 18:39:32",
      "modified": "2023-06-27 23:03:48",
      "commits": 6
    },
    {
      "source": "a7_review.Rmd",
      "filename": "a7_review.html",
      "title": "Review new data",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Using review()",
        "Including previous data",
        "Applying drift"
      ],
      "created": "2023-06-16 18:39:32",
      "modified": "2024-09-04 20:20:46",
      "commits": 3
    },
    {
      "source": "a4_season.Rmd",
      "filename": "a4_season.html",
      "title": "Seasonality",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Applying seasonality",
        "overlap argument",
        "season() function"
      ],
      "created": "2023-06-16 18:39:32",
      "modified": "2023-06-27 22:16:33",
      "commits": 3
    }
  ],
  "_score": 5.507855871695831,
  "_indexed": false,
  "_nocasepkg": "mort",
  "_universes": [
    "benjaminhlina"
  ],
  "_indexurl": "https://rosieluain.r-universe.dev/mort",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.1",
      "date": "2026-06-07T06:21:48.000Z",
      "distro": "noble",
      "commit": "20bcaf985c59faf0ba598b3de6381836e8169519",
      "fileid": "87fc441315e9a9d1efa719bf3060cee8ffdacd0a2b898b7b15da2719abf0fc1e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/benjaminhlina/actions/runs/27084681562"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.1",
      "date": "2026-06-07T06:21:49.000Z",
      "distro": "noble",
      "commit": "20bcaf985c59faf0ba598b3de6381836e8169519",
      "fileid": "7ce66134a2e52cb200ea23b53cbe8957f73b8d0ab399afdcf70e4b4491edf8e3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/benjaminhlina/actions/runs/27084681562"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.1",
      "date": "2026-06-07T06:21:18.000Z",
      "commit": "20bcaf985c59faf0ba598b3de6381836e8169519",
      "fileid": "00c1c66b9cee0537cb60cc980fd1ab6c400f3380a16b9cfd5cf132ed6d8dbddb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/benjaminhlina/actions/runs/27084681562"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.1",
      "date": "2026-06-07T06:21:06.000Z",
      "commit": "20bcaf985c59faf0ba598b3de6381836e8169519",
      "fileid": "70c0aa68f04b03bfb0d9b6ae0515e91db6efb8340e65d7bb7451ad238f15b558",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/benjaminhlina/actions/runs/27084681562"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.1",
      "date": "2026-06-07T06:21:39.000Z",
      "commit": "20bcaf985c59faf0ba598b3de6381836e8169519",
      "fileid": "efa969c1cbdba15daaa838afb3386fb1160644f44f59318ab33eba4ef164afb6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/benjaminhlina/actions/runs/27084681562"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-06-07T06:21:27.000Z",
      "commit": "20bcaf985c59faf0ba598b3de6381836e8169519",
      "fileid": "87906e243cc90ae88079a28c78d5bd44c9dd967854534899589a3ab836e19a66",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/benjaminhlina/actions/runs/27084681562"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-06-07T06:20:59.000Z",
      "commit": "20bcaf985c59faf0ba598b3de6381836e8169519",
      "fileid": "33aaf97344dd0bf2c735901780ce8a74c2cca4470d326c90f8798e6e66162212",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/benjaminhlina/actions/runs/27084681562"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-06-07T06:20:47.000Z",
      "commit": "20bcaf985c59faf0ba598b3de6381836e8169519",
      "fileid": "51918133b9dff0574efccc0638753d11904ec3d0e8af176459621c23d3c8d829",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/benjaminhlina/actions/runs/27084681562"
    }
  ]
}