Package: aniMotum 1.2-06
Ian Jonsen
aniMotum: Fit Continuous-Time State-Space and Latent Variable Models for Quality Control of Argos Satellite (and Other) Telemetry Data and for Estimating Changes in Animal Movement
Fits continuous-time random walk, correlated random walk and move persistence state-space models for location estimation and behavioural inference from animal tracking data ('Argos', processed light-level 'geolocation', 'GPS'). Template Model Builder ('TMB') is used for fast random-effects estimation. The 'Argos' data can be: (older) least squares-based locations; (newer) Kalman filter-based locations with error ellipse information; or a mixture of both. The models estimate two sets of location states corresponding to: 1) each observation, which are (usually) irregularly timed; and 2) user-specified time intervals (regular or irregular). A track re-routing function is provided to adjust location estimates for known movement barriers. Track simulation functions are provided. Latent variable models are also provided to estimate move persistence from track data not requiring state-space model filtering.
Authors:
aniMotum_1.2-06.tar.gz
aniMotum_1.2-06.zip(r-4.5)aniMotum_1.2-06.zip(r-4.4)aniMotum_1.2-06.zip(r-4.3)
aniMotum_1.2-06.tgz(r-4.4-x86_64)aniMotum_1.2-06.tgz(r-4.4-arm64)aniMotum_1.2-06.tgz(r-4.3-x86_64)aniMotum_1.2-06.tgz(r-4.3-arm64)
aniMotum_1.2-06.tar.gz(r-4.5-noble)aniMotum_1.2-06.tar.gz(r-4.4-noble)
aniMotum.pdf |aniMotum.html✨
aniMotum/json (API)
NEWS
# Install 'aniMotum' in R: |
install.packages('aniMotum', repos = c('https://benjaminhlina.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ianjonsen/animotum/issues
animal-movementanimal-trackingrandom-effects-modelstate-space-modelstmb
Last updated 3 months agofrom:e599da1808. Checks:OK: 4 NOTE: 5. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 30 2024 |
R-4.5-win-x86_64 | NOTE | Sep 30 2024 |
R-4.5-linux-x86_64 | NOTE | Sep 30 2024 |
R-4.4-win-x86_64 | NOTE | Sep 30 2024 |
R-4.4-mac-x86_64 | NOTE | Sep 30 2024 |
R-4.4-mac-aarch64 | NOTE | Sep 30 2024 |
R-4.3-win-x86_64 | OK | Sep 30 2024 |
R-4.3-mac-x86_64 | OK | Sep 30 2024 |
R-4.3-mac-aarch64 | OK | Sep 30 2024 |
Exports:aes_lstemffit_mpmfit_ssmfmapformat_datagrabjoinmapmpm_controlosarroute_pathsimsim_filtersim_fitsim_postsimilarity_flagsimilarity_varssm_control
Dependencies:abindaskpassbootCircStatsclassclassIntclicolorspacecpp11crsmetacurlDBIdeldirdplyre1071fansifarvergenericsgeodistgeosphereggplot2gluegmmgoftestgridExtragtablehttrisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellmvtnormnlmeopensslpatchworkpillarpkgconfigpolyclipPROJproj4proxypurrrR6rasterRColorBrewerRcppRcppEigenreprojrlangrnaturalearths2sandwichscalessfspspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrsystensorterratibbletidyrtidyselectTMBtmvtnormtraipsetripunitsutf8vctrsviridisviridisLitewithrwkzoo
Mapping
Rendered fromMapping.Rmd
usingknitr::rmarkdown
on Sep 30 2024.Last update: 2024-02-06
Started: 2022-05-19
Move_persistence_models
Rendered fromMove_persistence_models.Rmd
usingknitr::rmarkdown
on Sep 30 2024.Last update: 2024-02-06
Started: 2022-05-03
Overview
Rendered fromOverview.Rmd
usingknitr::rmarkdown
on Sep 30 2024.Last update: 2024-02-06
Started: 2022-05-19
Path_rerouting
Rendered fromPath_rerouting.Rmd
usingknitr::rmarkdown
on Sep 30 2024.Last update: 2022-12-09
Started: 2022-05-19
SSM_fitting
Rendered fromSSM_fitting.Rmd
usingknitr::rmarkdown
on Sep 30 2024.Last update: 2024-02-06
Started: 2022-04-26
SSM_validation
Rendered fromSSM_validation.Rmd
usingknitr::rmarkdown
on Sep 30 2024.Last update: 2024-02-06
Started: 2022-04-26
Track_simulation
Rendered fromTrack_simulation.Rmd
usingknitr::rmarkdown
on Sep 30 2024.Last update: 2024-02-06
Started: 2022-05-19